Tooluniverse Rare Disease Genomics

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• Tooluniverse Protein Structure PredictionPredicts 3D protein structure from a sequence with ESMFold and AlphaFold.
• Tooluniverse Protein Therapeutic DesignAI-guided de novo protein design — RFdiffusion backbone generation, ProteinMPNN sequence.
• Tooluniverse Proteomics AnalysisAnalyzes mass-spec proteomics data, from protein ID to differential expression.
• Tooluniverse Proteomics Data RetrievalFind and retrieve proteomics datasets from MassIVE and ProteomeXchange.
• Tooluniverse Regulatory GenomicsLooks up transcription factor binding and regulatory DNA elements.
• Tooluniverse Regulatory Variant AnalysisNon-coding/regulatory variant interpretation.
• Tooluniverse Residue Functional Mechanism InterpretationExplains why specific protein residues are functionally critical using structural context.
• Tooluniverse Rnaseq Deseq2Finds differentially expressed genes in RNA-seq data using DESeq2, edgeR, and limma.