Tooluniverse Regulatory Genomics

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• Tooluniverse Protein Therapeutic DesignAI-guided de novo protein design — RFdiffusion backbone generation, ProteinMPNN sequence.
• Tooluniverse Proteomics AnalysisAnalyzes mass-spec proteomics data, from protein ID to differential expression.
• Tooluniverse Proteomics Data RetrievalFind and retrieve proteomics datasets from MassIVE and ProteomeXchange.
• Tooluniverse Rare Disease GenomicsRare disease genomics — disease identification (Orphanet), causative gene discovery,.
• Tooluniverse Regulatory Variant AnalysisNon-coding/regulatory variant interpretation.
• Tooluniverse Residue Functional Mechanism InterpretationExplains why specific protein residues are functionally critical using structural context.
• Tooluniverse Rnaseq Deseq2Finds differentially expressed genes in RNA-seq data using DESeq2, edgeR, and limma.
• Tooluniverse Single CellPerforms single-cell RNA-seq analysis.